Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5841862_5846352_R

Intron Information:

Intron Rank:

130406

Intron Class:

major

Intron Phase:

Intron Coordinates:

5841862 - 5846352

Intron Length:

4491

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTCCCAATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTCAA

U12 Branch Point Sequence:

CTGTTCCCAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

79.3

31.1

Major BPS

66.8

0.42

1.1

69.4

37.7

Major PPT

76.9

0.6

0.9

70.3

33.8

Minor 5ss

28.2

-2.5

2.8

32.2

42.5

Minor BPS

48.9

-0

1.9

68.12

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017422

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030117

5823212 - 5846361

23150