Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58419238_58424235_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58419238 - 58424235

Intron Length:

4998

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGATCAT

5'SS Class:

major

3'SS Sequence:

TTCTGATTCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TACTTCTGATTC

Flanking Amino Acid:

LDKYLESRVEEIIKKQGEGV

Intron Amino Acid Position:

318

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

67.3

39.7

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

77.7

0.62

0.9

69.3

40.8

Minor 5ss

28.4

-2.5

3.2

46.1

Minor BPS

49.5

-0

1.7

59.7

39.8

Associated Gene:

Gene:

PPM1A

Ensembl Gene ID:

ENSAPLG00000005121

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027614

58413763 - 58440323

26561

ENSAPLT00000005294

58413763 - 58440323

26561