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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58450404_58457255_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
58450404 - 58457255
Intron Length:
6852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTGAA
5'SS Class:
major
3'SS Sequence:
TTCTTTTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GTTTACTCATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.2
32.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
86.8
0.83
0.8
83.9
31.1
Minor 5ss
38.2
-1.3
3.1
49.1
47.1
Minor BPS
50.3
0.09
2
74.32
42.4

Associated Gene:

Gene:
DHRS7
Ensembl Gene ID:
ENSAPLG00000005318
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022629
58450331 - 58478570
28240