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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58451815_58457255_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
58451815 - 58457255
Intron Length:
5441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGCATC
5'SS Class:
major
3'SS Sequence:
TTCTTTTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GTTTACTCATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.1
77.3
37.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
86.8
0.83
0.8
83.9
31.1
Minor 5ss
40.3
-1.1
2.8
52.4
44.4
Minor BPS
50.3
0.09
2
74.32
42.4

Associated Gene:

Gene:
DHRS7
Ensembl Gene ID:
ENSAPLG00000005318
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024697
58451689 - 58478570
26882