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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58457422_58458405_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58457422 - 58458405
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCCGTACC
5'SS Class:
major
3'SS Sequence:
TCTGCTGCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTAATTGATCT
Flanking Amino Acid:
DKETDTRIGRRVNKGSLTKV
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
70
38.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
71
0.47
0.9
64.3
36.7
Minor 5ss
31.3
-2.1
2.7
38.5
39.1
Minor BPS
49.1
0.01
1.9
74.8
41.6

Associated Gene:

Gene:
DHRS7
Ensembl Gene ID:
ENSAPLG00000005318
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024697
58451689 - 58478570
26882
ENSAPLT00000022629
58450331 - 58478570
28240
ENSAPLT00000022388
58445324 - 58478570
33247
ENSAPLT00000032832
58445324 - 58479261
33938
ENSAPLT00000026395
58446395 - 58478570
32176