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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58458474_58466075_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58458474 - 58466075
Intron Length:
7602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACTATT
5'SS Class:
major
3'SS Sequence:
ATTCTCCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GCTGTCTTGATT
Flanking Amino Acid:
AWSKTVTSHTETELRGKVVW
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.1
83.5
35
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
74
0.54
1
69.4
36.3
Minor 5ss
47.4
-0.3
2.7
65.8
39.5
Minor BPS
60.3
0.4
1.4
70.56
41.2

Associated Gene:

Gene:
DHRS7
Ensembl Gene ID:
ENSAPLG00000005318
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026395
58446395 - 58478570
32176
ENSAPLT00000024697
58451689 - 58478570
26882
ENSAPLT00000022629
58450331 - 58478570
28240
ENSAPLT00000022388
58445324 - 58478570
33247
ENSAPLT00000032832
58445324 - 58479261
33938