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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58473002_58476826_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58473002 - 58476826
Intron Length:
3825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
ATCACATTACAG
Flanking Amino Acid:
GYCASKHALQGFFNSLRTEL
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
68.9
0.47
1
75
30
Major PPT
83.8
0.76
0.7
76.9
31.8
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
44
-0.5
2
49.12
44

Associated Gene:

Gene:
DHRS7
Ensembl Gene ID:
ENSAPLG00000005318
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026029
58460541 - 58584810
124270
ENSAPLT00000021464
58460541 - 58637738
177198
ENSAPLT00000024697
58451689 - 58478570
26882
ENSAPLT00000005503
58460541 - 58478570
18030
ENSAPLT00000022629
58450331 - 58478570
28240
ENSAPLT00000032832
58445324 - 58479261
33938
ENSAPLT00000022388
58445324 - 58478570
33247
ENSAPLT00000026395
58446395 - 58478570
32176