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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58478520_58479225_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58478520 - 58479225
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCACTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ACTGACTGAATA
Flanking Amino Acid:
RRIQNFKSGVDADASYSRKT
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.1
0.61
0.9
67.7
38.3
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
49.3
-0
1.7
59.46
40.5

Associated Gene:

Gene:
DHRS7
Ensembl Gene ID:
ENSAPLG00000005318
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032832
58445324 - 58479261
33938