Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58483484_58483854_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58483484 - 58483854

Intron Length:

371

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTTTGAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

ATGTACTGAATG

Flanking Amino Acid:

LFSLGHDPNMGIYTGRVLTL

Intron Amino Acid Position:

1065

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

73.5

37.2

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

80.9

0.7

82.9

32.5

Minor 5ss

-1.9

2.9

37.4

41.9

Minor BPS

54.1

-0

1.7

59.88

41.9

Associated Gene:

Gene:

PCNX4

Ensembl Gene ID:

ENSAPLG00000005544

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036323

58481836 - 58494265

12430

ENSAPLT00000005747

58483232 - 58493599

10368