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Intron Name: Anas_platyrhynchos_platyrhynchos_5_58485566_58486019_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58485566 - 58486019

Intron Length:

454

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

ATTTGTGCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTGTTCTCATTT

Flanking Amino Acid:

GFTYCGVNIKGLELQETSCH

Intron Amino Acid Position:

657

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.6

1.07

0.7

84.1

26.6

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

69.1

0.43

0.9

66.6

Minor 5ss

-1.9

3.1

41.6

Minor BPS

55.6

0.25

1.8

75.42

Associated Gene:

Gene:

PCNX4

Ensembl Gene ID:

ENSAPLG00000005544

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036323

58481836 - 58494265

12430

ENSAPLT00000005747

58483232 - 58493599

10368