Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58486124_58488734_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58486124 - 58488734

Intron Length:

2611

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTGTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATACCAC

U12 Branch Point Sequence:

TTTTTCTTGTCT

Flanking Amino Acid:

LQSALAAGSLGLFLPGSHYL

Intron Amino Acid Position:

622

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

76.2

39.9

Major BPS

48.7

-0

1.3

58.5

37.6

Major PPT

82.7

0.74

0.8

77.4

36.9

Minor 5ss

34.9

-1.7

3.5

48.2

47.9

Minor BPS

52.8

0.17

3.5

90.53

33.5

Associated Gene:

Gene:

PCNX4

Ensembl Gene ID:

ENSAPLG00000005544

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036323

58481836 - 58494265

12430

ENSAPLT00000005747

58483232 - 58493599

10368