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Intron Name: Anas_platyrhynchos_platyrhynchos_5_58489099_58489239_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58489099 - 58489239

Intron Length:

141

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAATTGCC

5'SS Class:

major

3'SS Sequence:

ACACATCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACACAT

U12 Branch Point Sequence:

TTGTACACATCT

Flanking Amino Acid:

SLDTGIRLLLVGILRDRLLQ

Intron Amino Acid Position:

501

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

67.8

35.6

Major BPS

69.9

0.49

75.2

29.8

Major PPT

69.9

0.45

0.9

62.1

38.7

Minor 5ss

34.2

-1.8

3.1

38.9

Minor BPS

45.3

-0.2

2.2

70.55

45.7

Associated Gene:

Gene:

PCNX4

Ensembl Gene ID:

ENSAPLG00000005544

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036323

58481836 - 58494265

12430

ENSAPLT00000005747

58483232 - 58493599

10368