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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58490931_58492838_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58490931 - 58492838
Intron Length:
1908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTCCTTCACA
Flanking Amino Acid:
FVFIAVDLAHRLLVMFLISA
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.3
0.77
0.7
79.4
26.1
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
74.9
0.78
1.7
83.03
38.2

Associated Gene:

Gene:
PCNX4
Ensembl Gene ID:
ENSAPLG00000005544
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005747
58483232 - 58493599
10368