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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58491202_58492838_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58491202 - 58492838
Intron Length:
1637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TTTTCCTTCACA
Flanking Amino Acid:
FVFIAVDLAHRFAVNAPIIE
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
66.1
0.4
1
73
31.5
Major PPT
91.3
0.93
0.6
84.4
30.6
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
81.8
0.99
1.6
91.36
30.2

Associated Gene:

Gene:
PCNX4
Ensembl Gene ID:
ENSAPLG00000005544
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036323
58481836 - 58494265
12430