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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58493566_58494209_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
58493566 - 58494209
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATTGTTT
5'SS Class:
weak_major
3'SS Sequence:
TGTTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
TGTTTTTTTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.1
67.8
37.8
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
52
0.07
3
72.8
38.2
Minor BPS
65.3
0.48
1.6
75.28
35.7

Associated Gene:

Gene:
PCNX4
Ensembl Gene ID:
ENSAPLG00000005544
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036323
58481836 - 58494265
12430