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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58524882_58525401_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58524882 - 58525401
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATCCAT
U12 Branch Point Sequence:
TTTTGTGTTACA
Flanking Amino Acid:
KEPLLNKSNKSKSRIPGIRT
Intron Amino Acid Position:
1421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
80.8
33.6
Major BPS
60.7
0.27
1.2
70.5
35.7
Major PPT
85.6
0.8
0.9
79.9
37.7
Minor 5ss
44.7
-0.6
2.9
58
40.7
Minor BPS
46.3
-0.2
2.6
70.62
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005762
58522297 - 58569087
46791
ENSAPLT00000029771
58522297 - 58569087
46791
ENSAPLT00000021248
58522297 - 58569039
46743