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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58529327_58531460_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58529327 - 58531460
Intron Length:
2134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
TTTCTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTCTTTATAC
Flanking Amino Acid:
ELFLDFNRIKVSLKKNYRSL
Intron Amino Acid Position:
1321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
88.1
0.86
0.8
84.3
29.6
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
67.8
0.54
1.7
79.48
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005762
58522297 - 58569087
46791