Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58531679_58532218_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58531679 - 58532218

Intron Length:

540

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAGGTGAT

5'SS Class:

major

3'SS Sequence:

CTTGGTATGTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTTAC

U12 Branch Point Sequence:

CATGCATTTACT

Flanking Amino Acid:

LKNLKLLYLQGNYISRIKGL

Intron Amino Acid Position:

1248

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

1.1

72.3

39.5

Major BPS

66.4

0.41

37.6

Major PPT

63.7

0.31

1.1

62.7

43.1

Minor 5ss

32.5

-2

3.5

39.8

46.2

Minor BPS

49.7

0.06

2.1

70.16

46.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005575

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021248

58522297 - 58569039

46743

ENSAPLT00000005762

58522297 - 58569087

46791

ENSAPLT00000029771

58522297 - 58569087

46791