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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58532356_58535223_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58532356 - 58535223
Intron Length:
2868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCACCA
5'SS Class:
major
3'SS Sequence:
TTTATTGGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
GTTTACTTTATT
Flanking Amino Acid:
YGQQELAKERRDARFGENLP
Intron Amino Acid Position:
1202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.2
56.4
42.8
Major BPS
75.1
0.62
1
65.6
41
Major PPT
74.4
0.55
1
73.6
41.7
Minor 5ss
36.7
-1.5
3.2
49.5
46.2
Minor BPS
63.1
0.49
1.8
82.05
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005762
58522297 - 58569087
46791
ENSAPLT00000029771
58522297 - 58569087
46791
ENSAPLT00000021248
58522297 - 58569039
46743