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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58535826_58537388_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58535826 - 58537388
Intron Length:
1563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTCCTTGATT
Flanking Amino Acid:
QELNWATSNIRAIELVPADQ
Intron Amino Acid Position:
1119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
81.4
33.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
78.3
0.64
0.9
76.9
36.3
Minor 5ss
44.4
-0.6
3.2
67
44.3
Minor BPS
82.8
1.11
1
90.9
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029771
58522297 - 58569087
46791
ENSAPLT00000021248
58522297 - 58569039
46743
ENSAPLT00000005762
58522297 - 58569087
46791