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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58537520_58538082_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58537520 - 58538082
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATGCATTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATGCATTTAACA
Flanking Amino Acid:
SLKALDGIRVEPTEGESARD
Intron Amino Acid Position:
1076

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
79.5
29.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
68
0.4
1
62.3
42.4
Minor 5ss
43.7
-0.7
2.9
59.8
40
Minor BPS
61.4
0.35
1.5
68.31
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005762
58522297 - 58569087
46791
ENSAPLT00000029771
58522297 - 58569087
46791
ENSAPLT00000021248
58522297 - 58569039
46743