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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58539736_58545288_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58539736 - 58545288
Intron Length:
5553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGATAT
5'SS Class:
major
3'SS Sequence:
TATTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
RYIAGSNITQITVLNLDGQH
Intron Amino Acid Position:
856

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
71.5
34.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.9
0.83
0.8
82
33.9
Minor 5ss
42.1
-0.9
2.9
56.5
47.8
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021248
58522297 - 58569039
46743