Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58543875_58545288_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58543875 - 58545288

Intron Length:

1414

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGATAT

5'SS Class:

major

3'SS Sequence:

CTTTTTCCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATTAT

U12 Branch Point Sequence:

ATCTACTTAATA

Flanking Amino Acid:

RYIAGSNITQASLLKYSRTD

Intron Amino Acid Position:

856

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.7

0.53

1.2

71.5

34.2

Major BPS

75.9

0.64

66.1

40.5

Major PPT

84.4

0.77

0.7

77.3

31.5

Minor 5ss

42.1

-0.9

2.9

56.5

47.8

Minor BPS

70.1

0.63

1.4

74.71

36.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005575

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029771

58522297 - 58569087

46791

ENSAPLT00000005762

58522297 - 58569087

46791