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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58545415_58546586_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58545415 - 58546586
Intron Length:
1172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
LDITHNPWYKPASLRLSVIG
Intron Amino Acid Position:
814

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.9
44.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.7
0.6
1
75.4
33.4
Minor 5ss
34.1
-1.8
2.9
42.6
44.2
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029771
58522297 - 58569087
46791
ENSAPLT00000021248
58522297 - 58569039
46743
ENSAPLT00000005762
58522297 - 58569087
46791