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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58546779_58547673_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58546779 - 58547673
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTCAAACC
Flanking Amino Acid:
FTSLMDVYDLPNLEYFDASH
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
78.6
30
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
29.8
-2.3
3
37.3
41.2
Minor BPS
49.9
-0
1.9
67.47
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029771
58522297 - 58569087
46791
ENSAPLT00000021248
58522297 - 58569039
46743
ENSAPLT00000005762
58522297 - 58569087
46791