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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58547794_58549117_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58547794 - 58549117
Intron Length:
1324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTGACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TACTTTTGACCT
Flanking Amino Acid:
AKVNIYNQVQVLNLHGNSLS
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
80.8
28.9
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
65.7
0.35
1
58.7
41.6
Minor 5ss
33
-1.9
3.4
45.9
49.3
Minor BPS
50.4
0.09
1.7
69
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029771
58522297 - 58569087
46791
ENSAPLT00000021248
58522297 - 58569039
46743
ENSAPLT00000005762
58522297 - 58569087
46791