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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58549328_58550350_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58549328 - 58550350
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAACT
5'SS Class:
major
3'SS Sequence:
TTATTTTATATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTCTCTTATTT
Flanking Amino Acid:
YIAEFEYITLVKDKSLFSTC
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
72.6
36.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.6
0.69
0.9
77.4
35.8
Minor 5ss
42.3
-0.8
2.8
56
42.3
Minor BPS
62.3
0.46
1.6
77.8
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029771
58522297 - 58569087
46791
ENSAPLT00000021248
58522297 - 58569039
46743
ENSAPLT00000005762
58522297 - 58569087
46791