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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58551606_58552745_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58551606 - 58552745
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTCAA
5'SS Class:
major
3'SS Sequence:
TCTCTACACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAGAA
U12 Branch Point Sequence:
TTTCTCTCTACA
Flanking Amino Acid:
KRDPDESFRHGTVIIAKVFL
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
68.7
37.5
Major BPS
61.2
0.28
1
58.8
38.1
Major PPT
68.5
0.42
0.9
67
33.3
Minor 5ss
33.7
-1.9
2.9
38.1
41
Minor BPS
55.3
0.16
1.9
73.04
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029771
58522297 - 58569087
46791
ENSAPLT00000021248
58522297 - 58569039
46743
ENSAPLT00000005762
58522297 - 58569087
46791