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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58552882_58553655_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
58552882 - 58553655
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGCTGC
5'SS Class:
weak_major
3'SS Sequence:
TTAATTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATTGCTTTAATT
Flanking Amino Acid:
DGFQDLEVYTQSEKNEAVPL
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
57.1
43
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85.7
0.8
0.8
80.9
36.3
Minor 5ss
52.8
0.1
2.4
67.8
43.5
Minor BPS
75.6
0.88
1.2
85.82
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005762
58522297 - 58569087
46791
ENSAPLT00000029771
58522297 - 58569087
46791
ENSAPLT00000021248
58522297 - 58569039
46743