Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58556708_58558377_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58556708 - 58558377

Intron Length:

1670

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAACTTT

5'SS Class:

major

3'SS Sequence:

TTTCTGCACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

ATTAACTTACTG

Flanking Amino Acid:

RFEEGLSNHPWFSSCCELIQ

Intron Amino Acid Position:

406

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

73.9

37.5

Major BPS

81.9

0.79

0.8

81.9

Major PPT

74.6

0.55

0.9

69.2

36.1

Minor 5ss

49.3

-0

69.9

42.9

Minor BPS

49.6

-0.1

1.9

59.57

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005575

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021248

58522297 - 58569039

46743

ENSAPLT00000005762

58522297 - 58569087

46791

ENSAPLT00000029771

58522297 - 58569087

46791