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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58559955_58561278_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58559955 - 58561278
Intron Length:
1324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GTATTTTTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATCAT
U12 Branch Point Sequence:
GTATTTTTATCA
Flanking Amino Acid:
MKLFSCNIKHLERELAKLEM
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
62.7
0.32
1.3
66
40.9
Major PPT
78.5
0.64
1
78.2
39.8
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
60.2
0.32
1.6
68.32
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029771
58522297 - 58569087
46791
ENSAPLT00000021248
58522297 - 58569039
46743
ENSAPLT00000005762
58522297 - 58569087
46791