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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58565358_58566723_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
58565358 - 58566723
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
AAAACATTCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TATTGTTTAAAA
Flanking Amino Acid:
LNNNMIKNIEGLHTLQNLQE
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
59.9
0.22
1
50.8
41.8
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
61.8
0.37
1.8
73.69
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029771
58522297 - 58569087
46791
ENSAPLT00000021248
58522297 - 58569039
46743
ENSAPLT00000005762
58522297 - 58569087
46791