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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58567625_58568985_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58567625 - 58568985
Intron Length:
1361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CTTTGTTTCATT
Flanking Amino Acid:
QNLEEMIMKLCICNGLPYEK
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82.9
0.74
0.9
73.9
40.7
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
50.6
0.1
2.2
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005575
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005762
58522297 - 58569087
46791
ENSAPLT00000029771
58522297 - 58569087
46791
ENSAPLT00000021248
58522297 - 58569039
46743