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Intron Name: Anas_platyrhynchos_platyrhynchos_5_58649804_58686816_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58649804 - 58686816

Intron Length:

37013

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATGCA

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCTCCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

CTGCCTTTAACA

Flanking Amino Acid:

PLLPFLNKQRAIDLLYWRDI

Intron Amino Acid Position:

516

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

77.4

30.7

Major BPS

0.52

1.1

77.7

35.3

Major PPT

80.7

0.69

0.7

31.8

Minor 5ss

32.3

-2

3.2

41.6

Minor BPS

70.8

0.65

1.3

72.37

Associated Gene:

Gene:

RTN1

Ensembl Gene ID:

ENSAPLG00000014979

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032449

58646103 - 58691635

45533

ENSAPLT00000005790

58589538 - 58691635

102098