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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58688065_58688932_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58688065 - 58688932
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGATTG
5'SS Class:
major
3'SS Sequence:
GTCCTTAATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
CTGTCCTTAATT
Flanking Amino Acid:
LVQDLVDSLKFAVLMWLLTY
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
66.2
40.6
Major BPS
76.8
0.67
1
66
40.9
Major PPT
68.8
0.42
0.9
67
38.3
Minor 5ss
41.9
-0.9
3.4
55.7
43.1
Minor BPS
82.2
1.09
1.1
87.53
38.7

Associated Gene:

Gene:
RTN1
Ensembl Gene ID:
ENSAPLG00000014979
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032449
58646103 - 58691635
45533
ENSAPLT00000015661
58676242 - 58691635
15394
ENSAPLT00000005790
58589538 - 58691635
102098