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Intron Name: Anas_platyrhynchos_platyrhynchos_5_58689003_58689382_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58689003 - 58689382

Intron Length:

380

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAAAATT

5'SS Class:

major

3'SS Sequence:

TTTTTCTCCTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

AGGAATTTAACA

Flanking Amino Acid:

LFNGLTLLIMAVVSMFTLPV

Intron Amino Acid Position:

655

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

77.9

36.7

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

89.7

0.89

0.6

89.1

19.9

Minor 5ss

38.3

-1.3

3.2

49.8

46.3

Minor BPS

54.3

0.13

1.5

60.44

39.1

Associated Gene:

Gene:

RTN1

Ensembl Gene ID:

ENSAPLG00000014979

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032449

58646103 - 58691635

45533

ENSAPLT00000015661

58676242 - 58691635

15394

ENSAPLT00000005790

58589538 - 58691635

102098