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Intron Name: Anas_platyrhynchos_platyrhynchos_5_58689430_58689520_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58689430 - 58689520

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTCCA

5'SS Class:

strong_major

3'SS Sequence:

TTGCTCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTGAC

U12 Branch Point Sequence:

GCCCCACTGACT

Flanking Amino Acid:

TLPVVYDKYQAQIDQYLGLV

Intron Amino Acid Position:

671

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.4

1.05

0.8

80.7

33.8

Major BPS

61.3

0.28

52.7

34.2

Major PPT

0.74

0.8

77.3

31.4

Minor 5ss

34.5

-1.8

2.8

42.4

44.3

Minor BPS

45.2

-0.3

1.9

59.74

43.2

Associated Gene:

Gene:

RTN1

Ensembl Gene ID:

ENSAPLG00000014979

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015661

58676242 - 58691635

15394

ENSAPLT00000005790

58589538 - 58691635

102098

ENSAPLT00000032449

58646103 - 58691635

45533