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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58689580_58691058_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58689580 - 58691058
Intron Length:
1479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
VRTHINTVVAKIQAKIPGAK
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
27.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.6
0.78
0.7
77.7
35.6
Minor 5ss
36.7
-1.5
2.8
41.8
38.8
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
RTN1
Ensembl Gene ID:
ENSAPLG00000014979
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032449
58646103 - 58691635
45533
ENSAPLT00000015661
58676242 - 58691635
15394
ENSAPLT00000005790
58589538 - 58691635
102098