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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58705552_58707494_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58705552 - 58707494
Intron Length:
1943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTAATTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GGTTTGTTAATT
Flanking Amino Acid:
EDTITAIKKLEEIRRHTIEC
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
67.7
0.4
1.1
66.9
43.8
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
59.2
0.37
2.1
76.88
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014704
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015326
58701321 - 58730040
28720