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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58707607_58709261_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58707607 - 58709261
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTACTG
5'SS Class:
major
3'SS Sequence:
ATTTATTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGCTATTTATTT
Flanking Amino Acid:
FPREITAEMTALVNAARESS
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
59.2
45.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.7
0.74
0.8
78
35.5
Minor 5ss
34.3
-1.8
3.4
47.5
47.9
Minor BPS
51.6
0.13
1.8
69.14
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014704
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015326
58701321 - 58730040
28720