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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58710467_58711337_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58710467 - 58711337
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTAATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATG
Flanking Amino Acid:
EKENEECDEKNREMKNMLDI
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.3
34.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.9
0.58
0.9
72
37.6
Minor 5ss
34.5
-1.8
3.9
55
49.2
Minor BPS
72.1
0.56
1.2
71.31
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014704
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015326
58701321 - 58730040
28720