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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58711461_58712870_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58711461 - 58712870
Intron Length:
1410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTCATA
Flanking Amino Acid:
LQHLISLTSTAICNERNLIA
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.3
32.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
87.4
0.84
0.6
84.3
23.8
Minor 5ss
41.7
-0.9
2.8
54.7
43.6
Minor BPS
70.6
0.64
1.7
82.43
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014704
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015326
58701321 - 58730040
28720