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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58712981_58714071_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58712981 - 58714071
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
CTTTGTTTAATA
Flanking Amino Acid:
KRDMLGVLEKKNQLDSELLL
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
87.4
26.6
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
76.5
0.6
0.9
73.3
35.9
Minor 5ss
41.1
-1
3.2
58.9
39.4
Minor BPS
65.2
0.47
1.8
74.34
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014704
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015326
58701321 - 58730040
28720