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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58717943_58718971_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58717943 - 58718971
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAACTA
5'SS Class:
major
3'SS Sequence:
TATCTGTCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTTTGCTTATGT
Flanking Amino Acid:
EQKLKTEKKMRVMLQWKLLY
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.2
40.7
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
66.6
0.37
1
59.9
41.3
Minor 5ss
33.8
-1.8
3.5
47.8
47.6
Minor BPS
56.4
0.28
2.3
83.49
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014704
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015326
58701321 - 58730040
28720