About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58725427_58726578_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58725427 - 58726578
Intron Length:
1152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TATTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TATTTTTTTACA
Flanking Amino Acid:
VNTENCRFKLYNLQMKEDIF
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
0.9
78.7
29.9
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
92.5
0.96
0.7
87.8
29.2
Minor 5ss
35.7
-1.6
2.9
44
38.6
Minor BPS
65.9
0.49
1.6
75.62
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014704
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015326
58701321 - 58730040
28720