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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58726827_58727424_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58726827 - 58727424
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTTC
5'SS Class:
strong_major
3'SS Sequence:
CATGTCATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATGTCATTACAG
Flanking Amino Acid:
AWSEDSSIQKEFLENEQEIL
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
27.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.8
0.53
0.9
65.8
39.5
Minor 5ss
38.7
-1.3
3
52
45.2
Minor BPS
47.7
-0.3
2
56.34
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014704
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015326
58701321 - 58730040
28720