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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58728670_58730010_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
58728670 - 58730010
Intron Length:
1341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
GAGAACTTCACG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1.2
78.8
35.5
Major BPS
68.7
0.46
1
71.3
34
Major PPT
82.8
0.74
0.7
77.1
31.7
Minor 5ss
30.7
-2.2
3.1
42.2
44.4
Minor BPS
45
-0.5
2
47.37
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014704
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015326
58701321 - 58730040
28720