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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5880293_5880683_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5880293 - 5880683
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGCGTGCC
5'SS Class:
weak_major
3'SS Sequence:
CGTTCCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
ATAACGTTAATG
Flanking Amino Acid:
LLGDGFDPQQYKLLKALKEE
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.5
0.22
1.2
54.2
38.5
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
71.4
0.48
0.9
69.5
36.8
Minor 5ss
29.4
-2.4
3.3
36
41
Minor BPS
50.8
-0.1
2.1
59.48
42.4

Associated Gene:

Gene:
C11orf91
Ensembl Gene ID:
ENSAPLG00000017898
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024527
5879941 - 5880766
826