Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58865567_58885320_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

58865567 - 58885320

Intron Length:

19754

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCGGAG

U12 Branch Point Sequence:

GCTGCCGGAGCC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

85.3

25.4

Major BPS

35.1

-0.9

1.6

24.7

36.4

Major PPT

76.9

0.6

0.7

68.7

31.7

Minor 5ss

37.5

-1.4

2.8

46.9

41.8

Minor BPS

41.1

-0.6

2.3

51.68

45.2

Associated Gene:

Gene:

DAAM1

Ensembl Gene ID:

ENSAPLG00000013283

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013897

58865469 - 58937695

72227