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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58885545_58899105_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58885545 - 58899105
Intron Length:
13561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTACCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCC
Flanking Amino Acid:
ELDVMFTELVDELDLTDKHR
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
70.7
41.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.8
0.72
0.8
73.3
36.8
Minor 5ss
36.6
-1.5
2.7
43
38.4
Minor BPS
71
0.64
1.5
81.25
33.5

Associated Gene:

Gene:
DAAM1
Ensembl Gene ID:
ENSAPLG00000013283
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022235
58852098 - 58937695
85598
ENSAPLT00000013897
58865469 - 58937695
72227
ENSAPLT00000041843
58852098 - 58937695
85598